Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Gm7153-201ENSMUST00000117092 455 ntBASIC17.04■□□□□ 0.32
Sdc4O35988 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.04■□□□□ 0.32
Sdc4O35988 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.04■□□□□ 0.32
Sdc4O35988 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Sdc4O35988 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sdc4O35988 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sdc4O35988 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sdc4O35988 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sdc4O35988 Gm45203-201ENSMUST00000206384 1831 ntBASIC17.03■□□□□ 0.32
Sdc4O35988 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sdc4O35988 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.03■□□□□ 0.32
Sdc4O35988 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.03■□□□□ 0.32
Sdc4O35988 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sdc4O35988 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sdc4O35988 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.03■□□□□ 0.32
Sdc4O35988 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sdc4O35988 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Sdc4O35988 Gm10052-201ENSMUST00000168019 960 ntBASIC17.03■□□□□ 0.32
Sdc4O35988 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.03■□□□□ 0.32
Sdc4O35988 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC17.03■□□□□ 0.32
Sdc4O35988 Umpk-ps-201ENSMUST00000211897 827 ntBASIC17.03■□□□□ 0.32
Sdc4O35988 Gm7729-201ENSMUST00000050143 801 ntBASIC17.03■□□□□ 0.32
Sdc4O35988 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.03■□□□□ 0.32
Sdc4O35988 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
Sdc4O35988 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sdc4O35988 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sdc4O35988 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sdc4O35988 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Sdc4O35988 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.02■□□□□ 0.32
Sdc4O35988 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.02■□□□□ 0.32
Sdc4O35988 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Sdc4O35988 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Sdc4O35988 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sdc4O35988 Spr-ps1-201ENSMUST00000089584 605 ntBASIC17.02■□□□□ 0.32
Sdc4O35988 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Sdc4O35988 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Sdc4O35988 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Sdc4O35988 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Sdc4O35988 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Sdc4O35988 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Sdc4O35988 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.01■□□□□ 0.31
Sdc4O35988 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Sdc4O35988 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Sdc4O35988 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.01■□□□□ 0.31
Sdc4O35988 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Sdc4O35988 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sdc4O35988 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Sdc4O35988 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Sdc4O35988 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17■□□□□ 0.31
Sdc4O35988 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Sdc4O35988 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Sdc4O35988 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17■□□□□ 0.31
Sdc4O35988 AC124569.2-201ENSMUST00000225998 818 ntBASIC17■□□□□ 0.31
Sdc4O35988 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
Sdc4O35988 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Sdc4O35988 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Sdc4O35988 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Sdc4O35988 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Sdc4O35988 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Sdc4O35988 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sdc4O35988 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.99■□□□□ 0.31
Sdc4O35988 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sdc4O35988 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sdc4O35988 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Sdc4O35988 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
Sdc4O35988 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.99■□□□□ 0.31
Sdc4O35988 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms