Protein–RNA interactions for Protein: O35454

Clcn6, Chloride transport protein 6, mousemouse

Predictions only

Length 870 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn6O35454 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Clcn6O35454 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 4930433B08Rik-201ENSMUST00000192010 644 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.71■□□□□ 0.43
Clcn6O35454 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.71■□□□□ 0.43
Clcn6O35454 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Defb12-201ENSMUST00000062113 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Clcn6O35454 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Clcn6O35454 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clcn6O35454 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Clcn6O35454 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.71■□□□□ 0.42
Clcn6O35454 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Clcn6O35454 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC17.7■□□□□ 0.42
Clcn6O35454 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.7■□□□□ 0.42
Clcn6O35454 AC238940.1-201ENSMUST00000225106 1858 ntBASIC17.7■□□□□ 0.42
Clcn6O35454 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Gm14791-201ENSMUST00000119061 1166 ntBASIC17.7■□□□□ 0.42
Clcn6O35454 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Vmn1r60-201ENSMUST00000173782 1007 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Clcn6O35454 V1rg10-201ENSMUST00000183378 937 ntBASIC17.7■□□□□ 0.42
Clcn6O35454 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC17.7■□□□□ 0.42
Clcn6O35454 Gm42723-202ENSMUST00000200561 1254 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Sult3a1-202ENSMUST00000218204 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Aoah-202ENSMUST00000221982 919 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Sult3a1-201ENSMUST00000092597 1047 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Clcn6O35454 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Clcn6O35454 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Clcn6O35454 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Olfr183-204ENSMUST00000214831 1906 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Clcn6O35454 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clcn6O35454 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Clcn6O35454 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 AC108858.1-201ENSMUST00000228461 1498 ntBASIC17.69■□□□□ 0.42
Clcn6O35454 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.69■□□□□ 0.42
Clcn6O35454 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Clcn6O35454 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Gm9972-201ENSMUST00000069051 1533 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Clcn6O35454 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Prl5a1-201ENSMUST00000017208 1061 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Mir2861-201ENSMUST00000175539 82 ntBASIC17.69■□□□□ 0.42
Clcn6O35454 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Gm45425-201ENSMUST00000211727 618 ntTSL 2 BASIC17.69■□□□□ 0.42
Clcn6O35454 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.69■□□□□ 0.42
Clcn6O35454 AC154683.1-201ENSMUST00000228409 1284 ntBASIC17.69■□□□□ 0.42
Clcn6O35454 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Gm37820-201ENSMUST00000194021 2147 ntBASIC17.69■□□□□ 0.42
Clcn6O35454 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Clcn6O35454 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Clcn6O35454 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Clcn6O35454 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Clcn6O35454 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 2610001J05Rik-202ENSMUST00000155856 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clcn6O35454 Celrr-201ENSMUST00000181183 1194 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms