Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Gm1818-201ENSMUST00000169406 1184 ntBASIC22.82■■□□□ 1.24
Cpsf1Q9EPU4 Gm27867-201ENSMUST00000184778 125 ntBASIC22.82■■□□□ 1.24
Cpsf1Q9EPU4 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC22.82■■□□□ 1.24
Cpsf1Q9EPU4 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC22.82■■□□□ 1.24
Cpsf1Q9EPU4 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC22.82■■□□□ 1.24
Cpsf1Q9EPU4 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Cpsf1Q9EPU4 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Cpsf1Q9EPU4 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC22.81■■□□□ 1.24
Cpsf1Q9EPU4 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Cpsf1Q9EPU4 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC22.81■■□□□ 1.24
Cpsf1Q9EPU4 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC22.81■■□□□ 1.24
Cpsf1Q9EPU4 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Cpsf1Q9EPU4 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Cpsf1Q9EPU4 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Cpsf1Q9EPU4 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf1Q9EPU4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cpsf1Q9EPU4 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cpsf1Q9EPU4 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cpsf1Q9EPU4 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC22.79■■□□□ 1.24
Cpsf1Q9EPU4 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Cpsf1Q9EPU4 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cpsf1Q9EPU4 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cpsf1Q9EPU4 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Cpsf1Q9EPU4 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cpsf1Q9EPU4 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Gm25406-201ENSMUST00000157599 105 ntBASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Gm5864-201ENSMUST00000202263 970 ntBASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC22.78■■□□□ 1.24
Cpsf1Q9EPU4 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm12644-201ENSMUST00000119935 606 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44357-201ENSMUST00000195897 142 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm19658-201ENSMUST00000196231 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44367-201ENSMUST00000196836 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44350-201ENSMUST00000197197 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44390-201ENSMUST00000197533 144 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44313-201ENSMUST00000198018 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44486-201ENSMUST00000198508 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44314-201ENSMUST00000199263 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44394-201ENSMUST00000199558 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44484-201ENSMUST00000199873 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44466-201ENSMUST00000200264 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Gm44359-201ENSMUST00000200671 138 ntBASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Cpsf1Q9EPU4 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 Gm7935-201ENSMUST00000100555 1278 ntBASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 AC127349.1-201ENSMUST00000224590 266 ntBASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 Rps4l-201ENSMUST00000071745 943 ntBASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Cpsf1Q9EPU4 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 AW822252-206ENSMUST00000208904 237 ntBASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
Cpsf1Q9EPU4 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms