Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Gm7284-201ENSMUST00000131667 944 ntBASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Cdc40Q9DC48 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC15.41■□□□□ 0.06
Cdc40Q9DC48 Gm16401-202ENSMUST00000197463 2074 ntBASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Gm7292-201ENSMUST00000194706 2527 ntBASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cdc40Q9DC48 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Cdc40Q9DC48 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Gm8258-201ENSMUST00000055593 1449 ntBASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Gm15743-202ENSMUST00000182690 1901 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms