Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Msh4Q99MT2 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msh4Q99MT2 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.15■□□□□ 0.18
Msh4Q99MT2 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Gm7370-201ENSMUST00000219471 767 ntBASIC16.15■□□□□ 0.18
Msh4Q99MT2 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msh4Q99MT2 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Gm13474-201ENSMUST00000122466 815 ntBASIC16.14■□□□□ 0.17
Msh4Q99MT2 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Gm18032-201ENSMUST00000222541 538 ntBASIC16.14■□□□□ 0.17
Msh4Q99MT2 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msh4Q99MT2 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC16.13■□□□□ 0.17
Msh4Q99MT2 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Gm37166-201ENSMUST00000195473 2474 ntBASIC16.13■□□□□ 0.17
Msh4Q99MT2 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Msh4Q99MT2 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms