Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
Usp47Q8BY87 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC23.36■■□□□ 1.33
Usp47Q8BY87 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Usp47Q8BY87 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp47Q8BY87 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp47Q8BY87 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Usp47Q8BY87 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp47Q8BY87 Gm24589-201ENSMUST00000116692 94 ntBASIC23.34■■□□□ 1.33
Usp47Q8BY87 Gm7153-201ENSMUST00000117092 455 ntBASIC23.34■■□□□ 1.33
Usp47Q8BY87 Rprl3-201ENSMUST00000157400 290 ntBASIC23.34■■□□□ 1.33
Usp47Q8BY87 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp47Q8BY87 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp47Q8BY87 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp47Q8BY87 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp47Q8BY87 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Usp47Q8BY87 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp47Q8BY87 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp47Q8BY87 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC23.33■■□□□ 1.33
Usp47Q8BY87 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp47Q8BY87 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Usp47Q8BY87 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp47Q8BY87 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp47Q8BY87 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp47Q8BY87 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp47Q8BY87 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
Usp47Q8BY87 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC23.32■■□□□ 1.32
Usp47Q8BY87 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Usp47Q8BY87 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Gm32996-201ENSMUST00000199828 1447 ntBASIC23.31■■□□□ 1.32
Usp47Q8BY87 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC23.31■■□□□ 1.32
Usp47Q8BY87 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Usp47Q8BY87 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Usp47Q8BY87 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC23.29■■□□□ 1.32
Usp47Q8BY87 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Usp47Q8BY87 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC23.29■■□□□ 1.32
Usp47Q8BY87 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Usp47Q8BY87 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
Usp47Q8BY87 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Usp47Q8BY87 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Usp47Q8BY87 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Usp47Q8BY87 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Usp47Q8BY87 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Usp47Q8BY87 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Usp47Q8BY87 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC23.28■■□□□ 1.32
Usp47Q8BY87 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms