Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Usp28Q5I043 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Usp28Q5I043 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Usp28Q5I043 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC18.84■□□□□ 0.61
Usp28Q5I043 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Usp28Q5I043 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Usp28Q5I043 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Usp28Q5I043 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp28Q5I043 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp28Q5I043 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.83■□□□□ 0.6
Usp28Q5I043 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC18.83■□□□□ 0.6
Usp28Q5I043 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp28Q5I043 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
Usp28Q5I043 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Usp28Q5I043 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Usp28Q5I043 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.82■□□□□ 0.6
Usp28Q5I043 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
Usp28Q5I043 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Usp28Q5I043 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC18.82■□□□□ 0.6
Usp28Q5I043 Gm7370-201ENSMUST00000219471 767 ntBASIC18.82■□□□□ 0.6
Usp28Q5I043 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Usp28Q5I043 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp28Q5I043 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Usp28Q5I043 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp28Q5I043 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp28Q5I043 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Usp28Q5I043 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.82■□□□□ 0.6
Usp28Q5I043 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp28Q5I043 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp28Q5I043 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp28Q5I043 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp28Q5I043 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp28Q5I043 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Usp28Q5I043 Actl10-202ENSMUST00000226583 1501 ntBASIC18.81■□□□□ 0.6
Usp28Q5I043 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp28Q5I043 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.81■□□□□ 0.6
Usp28Q5I043 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Gm43072-201ENSMUST00000200283 1671 ntBASIC18.81■□□□□ 0.6
Usp28Q5I043 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp28Q5I043 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.81■□□□□ 0.6
Usp28Q5I043 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Usp28Q5I043 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Usp28Q5I043 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.8■□□□□ 0.6
Usp28Q5I043 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.8■□□□□ 0.6
Usp28Q5I043 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC18.8■□□□□ 0.6
Usp28Q5I043 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.8■□□□□ 0.6
Usp28Q5I043 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.8■□□□□ 0.6
Usp28Q5I043 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp28Q5I043 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms