Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Limch1Q3UH68 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Limch1Q3UH68 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC19.5■□□□□ 0.71
Limch1Q3UH68 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.5■□□□□ 0.71
Limch1Q3UH68 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Limch1Q3UH68 AC154471.1-201ENSMUST00000224418 436 ntBASIC19.5■□□□□ 0.71
Limch1Q3UH68 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Limch1Q3UH68 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Limch1Q3UH68 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Limch1Q3UH68 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Limch1Q3UH68 Gm8258-201ENSMUST00000055593 1449 ntBASIC19.5■□□□□ 0.71
Limch1Q3UH68 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.49■□□□□ 0.71
Limch1Q3UH68 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Limch1Q3UH68 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Limch1Q3UH68 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19.48■□□□□ 0.71
Limch1Q3UH68 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Limch1Q3UH68 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Limch1Q3UH68 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Gm7284-201ENSMUST00000131667 944 ntBASIC19.47■□□□□ 0.71
Limch1Q3UH68 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Gm7370-201ENSMUST00000219471 767 ntBASIC19.47■□□□□ 0.71
Limch1Q3UH68 Gm21559-201ENSMUST00000220638 855 ntBASIC19.47■□□□□ 0.71
Limch1Q3UH68 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Gm8587-201ENSMUST00000076538 843 ntBASIC19.47■□□□□ 0.71
Limch1Q3UH68 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Limch1Q3UH68 AC154855.1-201ENSMUST00000227353 1458 ntBASIC19.47■□□□□ 0.71
Limch1Q3UH68 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Limch1Q3UH68 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC19.46■□□□□ 0.71
Limch1Q3UH68 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Gm27389-201ENSMUST00000183622 195 ntBASIC19.46■□□□□ 0.71
Limch1Q3UH68 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms