Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ddb1Q3U1J4 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 AC158982.1-201ENSMUST00000228377 901 ntBASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC21.03■□□□□ 0.96
Ddb1Q3U1J4 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ddb1Q3U1J4 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Ddb1Q3U1J4 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddb1Q3U1J4 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ddb1Q3U1J4 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ddb1Q3U1J4 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddb1Q3U1J4 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Ddb1Q3U1J4 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC21.02■□□□□ 0.96
Ddb1Q3U1J4 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddb1Q3U1J4 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ddb1Q3U1J4 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Ddb1Q3U1J4 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 Gm15500-202ENSMUST00000071641 1019 ntBASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddb1Q3U1J4 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Gm10616-201ENSMUST00000205285 2127 ntBASIC21■□□□□ 0.95
Ddb1Q3U1J4 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Ddb1Q3U1J4 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddb1Q3U1J4 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddb1Q3U1J4 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 Gm25406-201ENSMUST00000157599 105 ntBASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 AC159106.1-201ENSMUST00000224421 690 ntBASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms