Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
Col3a1P08121 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Col3a1P08121 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Gm12497-201ENSMUST00000138778 237 ntBASIC19.73■□□□□ 0.75
Col3a1P08121 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Gm5712-201ENSMUST00000199748 1043 ntBASIC19.73■□□□□ 0.75
Col3a1P08121 Vti1a-206ENSMUST00000225529 1244 ntBASIC19.73■□□□□ 0.75
Col3a1P08121 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC19.73■□□□□ 0.75
Col3a1P08121 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Col3a1P08121 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Col3a1P08121 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col3a1P08121 Gm13216-201ENSMUST00000117145 591 ntBASIC19.73■□□□□ 0.75
Col3a1P08121 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Col3a1P08121 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Col3a1P08121 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Col3a1P08121 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC19.72■□□□□ 0.75
Col3a1P08121 Mir6404-201ENSMUST00000183699 94 ntBASIC19.72■□□□□ 0.75
Col3a1P08121 Rbfox2-207ENSMUST00000227533 1041 ntBASIC19.72■□□□□ 0.75
Col3a1P08121 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Col3a1P08121 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col3a1P08121 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Gm25990-201ENSMUST00000102440 86 ntBASIC19.71■□□□□ 0.75
Col3a1P08121 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Gm2651-201ENSMUST00000203560 838 ntBASIC19.71■□□□□ 0.75
Col3a1P08121 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Col3a1P08121 Gm7506-201ENSMUST00000207758 815 ntBASIC19.71■□□□□ 0.75
Col3a1P08121 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Gm6376-201ENSMUST00000209407 580 ntBASIC19.71■□□□□ 0.75
Col3a1P08121 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC19.71■□□□□ 0.75
Col3a1P08121 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Col3a1P08121 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col3a1P08121 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col3a1P08121 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Col3a1P08121 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col3a1P08121 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col3a1P08121 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC19.7■□□□□ 0.74
Col3a1P08121 Gm43073-201ENSMUST00000198200 1189 ntBASIC19.7■□□□□ 0.74
Col3a1P08121 Gm10060-201ENSMUST00000212002 111 ntBASIC19.7■□□□□ 0.74
Col3a1P08121 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col3a1P08121 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col3a1P08121 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col3a1P08121 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col3a1P08121 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
Col3a1P08121 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
Col3a1P08121 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Col3a1P08121 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
Col3a1P08121 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC19.69■□□□□ 0.74
Col3a1P08121 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
Col3a1P08121 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Col3a1P08121 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Col3a1P08121 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
Col3a1P08121 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col3a1P08121 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms