Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC16.16■□□□□ 0.18
ClppO88696 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Gm9103-201ENSMUST00000119371 405 ntBASIC16.16■□□□□ 0.18
ClppO88696 Gm27704-201ENSMUST00000185094 107 ntBASIC16.16■□□□□ 0.18
ClppO88696 Ank2-226ENSMUST00000189368 339 ntBASIC16.16■□□□□ 0.18
ClppO88696 Gm29518-201ENSMUST00000190858 372 ntBASIC16.16■□□□□ 0.18
ClppO88696 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC16.16■□□□□ 0.18
ClppO88696 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
ClppO88696 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.16■□□□□ 0.18
ClppO88696 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.16■□□□□ 0.18
ClppO88696 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
ClppO88696 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
ClppO88696 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
ClppO88696 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ClppO88696 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
ClppO88696 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC16.16■□□□□ 0.18
ClppO88696 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.15■□□□□ 0.18
ClppO88696 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.15■□□□□ 0.18
ClppO88696 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
ClppO88696 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
ClppO88696 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.15■□□□□ 0.18
ClppO88696 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC16.15■□□□□ 0.18
ClppO88696 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC16.15■□□□□ 0.18
ClppO88696 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.15■□□□□ 0.18
ClppO88696 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ClppO88696 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
ClppO88696 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
ClppO88696 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
ClppO88696 Actl10-202ENSMUST00000226583 1501 ntBASIC16.14■□□□□ 0.18
ClppO88696 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.14■□□□□ 0.17
ClppO88696 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 AC122351.1-201ENSMUST00000220467 126 ntBASIC16.14■□□□□ 0.17
ClppO88696 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.14■□□□□ 0.17
ClppO88696 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.14■□□□□ 0.17
ClppO88696 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
ClppO88696 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
ClppO88696 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
ClppO88696 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC16.14■□□□□ 0.17
ClppO88696 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ClppO88696 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
ClppO88696 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
ClppO88696 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.13■□□□□ 0.17
ClppO88696 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
ClppO88696 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.13■□□□□ 0.17
ClppO88696 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Gm18958-201ENSMUST00000174258 762 ntBASIC16.13■□□□□ 0.17
ClppO88696 Gm8969-201ENSMUST00000199694 526 ntBASIC16.13■□□□□ 0.17
ClppO88696 Gm17808-201ENSMUST00000200859 894 ntBASIC16.13■□□□□ 0.17
ClppO88696 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.13■□□□□ 0.17
ClppO88696 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.13■□□□□ 0.17
ClppO88696 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
ClppO88696 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC16.13■□□□□ 0.17
ClppO88696 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ClppO88696 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms