Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Gm27459-201ENSMUST00000184860 107 ntBASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim54Q9ERP3 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Gm5864-201ENSMUST00000202263 970 ntBASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Gm44771-201ENSMUST00000206975 626 ntBASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Trim54Q9ERP3 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Gm43347-201ENSMUST00000200226 580 ntBASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim54Q9ERP3 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Trim54Q9ERP3 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
Trim54Q9ERP3 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.96■□□□□ 0.46
Trim54Q9ERP3 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Trim54Q9ERP3 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Gm28659-201ENSMUST00000188013 759 ntBASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC17.95■□□□□ 0.46
Trim54Q9ERP3 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.94■□□□□ 0.46
Trim54Q9ERP3 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim54Q9ERP3 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC17.93■□□□□ 0.46
Trim54Q9ERP3 AC164629.2-201ENSMUST00000217916 270 ntBASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms