Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Smc1aQ9CU62 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Smc1aQ9CU62 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smc1aQ9CU62 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Gm14859-201ENSMUST00000117752 357 ntBASIC18.56■□□□□ 0.56
Smc1aQ9CU62 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC18.56■□□□□ 0.56
Smc1aQ9CU62 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Gm27741-201ENSMUST00000185060 237 ntBASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Gm9867-201ENSMUST00000192212 2647 ntBASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smc1aQ9CU62 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Idnk-204ENSMUST00000226010 1898 ntBASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Smc1aQ9CU62 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms