Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msh4Q99MT2 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msh4Q99MT2 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msh4Q99MT2 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Msh4Q99MT2 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msh4Q99MT2 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Msh4Q99MT2 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msh4Q99MT2 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Msh4Q99MT2 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC16.21■□□□□ 0.19
Msh4Q99MT2 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC16.21■□□□□ 0.19
Msh4Q99MT2 Gm11620-201ENSMUST00000118770 1845 ntBASIC16.21■□□□□ 0.19
Msh4Q99MT2 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Msh4Q99MT2 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Msh4Q99MT2 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh4Q99MT2 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Msh4Q99MT2 AC120002.2-201ENSMUST00000220205 773 ntBASIC16.2■□□□□ 0.18
Msh4Q99MT2 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh4Q99MT2 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Msh4Q99MT2 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.2■□□□□ 0.18
Msh4Q99MT2 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Gm13216-201ENSMUST00000117145 591 ntBASIC16.19■□□□□ 0.18
Msh4Q99MT2 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.19■□□□□ 0.18
Msh4Q99MT2 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh4Q99MT2 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Gm16061-201ENSMUST00000122167 857 ntBASIC16.18■□□□□ 0.18
Msh4Q99MT2 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC16.18■□□□□ 0.18
Msh4Q99MT2 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh4Q99MT2 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh4Q99MT2 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms