Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx58Q6Q899 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx58Q6Q899 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx58Q6Q899 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx58Q6Q899 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx58Q6Q899 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx58Q6Q899 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx58Q6Q899 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx58Q6Q899 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Ddx58Q6Q899 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx58Q6Q899 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx58Q6Q899 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ddx58Q6Q899 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ddx58Q6Q899 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Gm27459-201ENSMUST00000184860 107 ntBASIC20.51■□□□□ 0.87
Ddx58Q6Q899 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx58Q6Q899 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 AC108846.1-201ENSMUST00000214531 513 ntBASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx58Q6Q899 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 Slc35b2-202ENSMUST00000223987 1766 ntBASIC20.49■□□□□ 0.87
Ddx58Q6Q899 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC20.49■□□□□ 0.87
Ddx58Q6Q899 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx58Q6Q899 Gm7461-201ENSMUST00000058918 827 ntBASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms