Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
Col7a1Q63870 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col7a1Q63870 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col7a1Q63870 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Col7a1Q63870 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Col7a1Q63870 Gm13042-201ENSMUST00000119244 1955 ntBASIC13.76□□□□□ -0.21
Col7a1Q63870 Gm12490-201ENSMUST00000120255 560 ntBASIC13.76□□□□□ -0.21
Col7a1Q63870 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Gm45747-201ENSMUST00000212203 999 ntBASIC13.76□□□□□ -0.21
Col7a1Q63870 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Col7a1Q63870 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC13.76□□□□□ -0.21
Col7a1Q63870 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col7a1Q63870 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 Grk6-207ENSMUST00000225925 2769 ntBASIC13.75□□□□□ -0.21
Col7a1Q63870 Gm6858-201ENSMUST00000208582 1468 ntBASIC13.75□□□□□ -0.21
Col7a1Q63870 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
Col7a1Q63870 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Col7a1Q63870 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col7a1Q63870 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Col7a1Q63870 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Col7a1Q63870 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC13.74□□□□□ -0.21
Col7a1Q63870 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC13.74□□□□□ -0.21
Col7a1Q63870 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
Col7a1Q63870 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Col7a1Q63870 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Gm43125-201ENSMUST00000201724 730 ntBASIC13.74□□□□□ -0.21
Col7a1Q63870 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Col7a1Q63870 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col7a1Q63870 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Col7a1Q63870 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Col7a1Q63870 Gm15427-201ENSMUST00000117288 531 ntBASIC13.73□□□□□ -0.21
Col7a1Q63870 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC13.73□□□□□ -0.21
Col7a1Q63870 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
Col7a1Q63870 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC13.73□□□□□ -0.21
Col7a1Q63870 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Ddx41-204ENSMUST00000224765 2199 ntBASIC13.73□□□□□ -0.21
Col7a1Q63870 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Col7a1Q63870 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Col7a1Q63870 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC13.73□□□□□ -0.21
Col7a1Q63870 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col7a1Q63870 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms