Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.73■□□□□ 0.43
HttP42859 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC17.73■□□□□ 0.43
HttP42859 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HttP42859 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.73■□□□□ 0.43
HttP42859 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC17.73■□□□□ 0.43
HttP42859 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HttP42859 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HttP42859 Gm45612-201ENSMUST00000211320 160 ntBASIC17.72■□□□□ 0.43
HttP42859 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC17.72■□□□□ 0.43
HttP42859 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HttP42859 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HttP42859 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC17.72■□□□□ 0.43
HttP42859 Gm5253-201ENSMUST00000187104 1025 ntBASIC17.72■□□□□ 0.43
HttP42859 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HttP42859 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HttP42859 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HttP42859 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.72■□□□□ 0.43
HttP42859 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HttP42859 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
HttP42859 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.72■□□□□ 0.43
HttP42859 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HttP42859 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
HttP42859 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
HttP42859 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.72■□□□□ 0.43
HttP42859 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HttP42859 Gm2423-201ENSMUST00000074863 733 ntBASIC17.72■□□□□ 0.43
HttP42859 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.71■□□□□ 0.43
HttP42859 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
HttP42859 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HttP42859 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC17.71■□□□□ 0.43
HttP42859 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.71■□□□□ 0.43
HttP42859 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HttP42859 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HttP42859 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
HttP42859 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
HttP42859 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC17.7■□□□□ 0.42
HttP42859 Gm14127-201ENSMUST00000117906 678 ntBASIC17.7■□□□□ 0.42
HttP42859 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 AC125206.2-201ENSMUST00000217454 574 ntBASIC17.7■□□□□ 0.42
HttP42859 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 Gm4899-201ENSMUST00000178708 719 ntBASIC17.7■□□□□ 0.42
HttP42859 Gm8825-201ENSMUST00000182565 998 ntBASIC17.7■□□□□ 0.42
HttP42859 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 AC155252.2-201ENSMUST00000226946 680 ntBASIC17.7■□□□□ 0.42
HttP42859 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HttP42859 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC17.7■□□□□ 0.42
HttP42859 Gm27622-201ENSMUST00000183779 60 ntBASIC17.7■□□□□ 0.42
HttP42859 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HttP42859 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HttP42859 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HttP42859 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HttP42859 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HttP42859 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HttP42859 AC130829.1-201ENSMUST00000221548 494 ntBASIC17.69■□□□□ 0.42
HttP42859 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HttP42859 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.69■□□□□ 0.42
HttP42859 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.69■□□□□ 0.42
HttP42859 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.69■□□□□ 0.42
HttP42859 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC17.69■□□□□ 0.42
HttP42859 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HttP42859 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HttP42859 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HttP42859 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.68■□□□□ 0.42
HttP42859 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.68■□□□□ 0.42
HttP42859 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC17.68■□□□□ 0.42
HttP42859 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HttP42859 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HttP42859 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HttP42859 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HttP42859 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HttP42859 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HttP42859 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.67■□□□□ 0.42
HttP42859 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms