Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC19.21■□□□□ 0.67
Traf1P39428 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC19.21■□□□□ 0.67
Traf1P39428 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Traf1P39428 Gm17971-201ENSMUST00000190239 806 ntBASIC19.21■□□□□ 0.67
Traf1P39428 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Traf1P39428 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Traf1P39428 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Traf1P39428 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Traf1P39428 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Traf1P39428 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Traf1P39428 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.2■□□□□ 0.66
Traf1P39428 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.2■□□□□ 0.66
Traf1P39428 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Traf1P39428 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Traf1P39428 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC19.2■□□□□ 0.66
Traf1P39428 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Traf1P39428 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC19.2■□□□□ 0.66
Traf1P39428 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Traf1P39428 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Traf1P39428 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Traf1P39428 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Traf1P39428 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Traf1P39428 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Traf1P39428 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Traf1P39428 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC19.2■□□□□ 0.66
Traf1P39428 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Traf1P39428 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC19.2■□□□□ 0.66
Traf1P39428 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Traf1P39428 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Traf1P39428 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Traf1P39428 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Traf1P39428 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Traf1P39428 Gm15794-201ENSMUST00000120182 631 ntBASIC19.19■□□□□ 0.66
Traf1P39428 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.19■□□□□ 0.66
Traf1P39428 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Traf1P39428 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Traf1P39428 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Traf1P39428 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Traf1P39428 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Traf1P39428 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Traf1P39428 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Traf1P39428 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19.18■□□□□ 0.66
Traf1P39428 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Traf1P39428 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Traf1P39428 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Traf1P39428 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Traf1P39428 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Traf1P39428 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Traf1P39428 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Olfr129-201ENSMUST00000122318 993 ntBASIC19.17■□□□□ 0.66
Traf1P39428 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC19.17■□□□□ 0.66
Traf1P39428 Gm18421-201ENSMUST00000204122 625 ntBASIC19.17■□□□□ 0.66
Traf1P39428 AC125350.1-201ENSMUST00000225115 903 ntBASIC19.17■□□□□ 0.66
Traf1P39428 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Traf1P39428 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Traf1P39428 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Traf1P39428 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC19.16■□□□□ 0.66
Traf1P39428 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Traf1P39428 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Traf1P39428 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.16■□□□□ 0.66
Traf1P39428 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC19.16■□□□□ 0.66
Traf1P39428 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC19.16■□□□□ 0.66
Traf1P39428 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms