Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Gm18101-201ENSMUST00000215769 548 ntBASIC18.3■□□□□ 0.52
Msh3P13705 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Msh3P13705 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.29■□□□□ 0.52
Msh3P13705 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Msh3P13705 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC18.29■□□□□ 0.52
Msh3P13705 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Msh3P13705 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Msh3P13705 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Msh3P13705 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Msh3P13705 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Msh3P13705 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.29■□□□□ 0.52
Msh3P13705 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Msh3P13705 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Msh3P13705 Gm36967-201ENSMUST00000193814 266 ntBASIC18.29■□□□□ 0.52
Msh3P13705 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.29■□□□□ 0.52
Msh3P13705 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh3P13705 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Msh3P13705 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Msh3P13705 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.28■□□□□ 0.52
Msh3P13705 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.28■□□□□ 0.52
Msh3P13705 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.28■□□□□ 0.52
Msh3P13705 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Msh3P13705 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Msh3P13705 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.28■□□□□ 0.52
Msh3P13705 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Msh3P13705 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
Msh3P13705 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh3P13705 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.27■□□□□ 0.52
Msh3P13705 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Msh3P13705 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.27■□□□□ 0.52
Msh3P13705 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.27■□□□□ 0.52
Msh3P13705 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.27■□□□□ 0.52
Msh3P13705 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.27■□□□□ 0.52
Msh3P13705 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Msh3P13705 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Msh3P13705 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Msh3P13705 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Msh3P13705 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Msh3P13705 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Msh3P13705 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Msh3P13705 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 AC115863.1-201ENSMUST00000214815 1813 ntBASIC18.26■□□□□ 0.51
Msh3P13705 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Msh3P13705 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msh3P13705 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms