Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Birc2-201ENSMUST00000054878 378 ntBASIC16.25■□□□□ 0.19
Chd3B1AR17 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Chd3B1AR17 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Chd3B1AR17 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Chd3B1AR17 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Chd3B1AR17 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
Chd3B1AR17 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Gm27867-201ENSMUST00000184778 125 ntBASIC16.24■□□□□ 0.19
Chd3B1AR17 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.24■□□□□ 0.19
Chd3B1AR17 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Chd3B1AR17 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Chd3B1AR17 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC16.23■□□□□ 0.19
Chd3B1AR17 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.23■□□□□ 0.19
Chd3B1AR17 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.23■□□□□ 0.19
Chd3B1AR17 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC16.23■□□□□ 0.19
Chd3B1AR17 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Ighv6-1-201ENSMUST00000193612 343 ntBASIC16.23■□□□□ 0.19
Chd3B1AR17 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Chd3B1AR17 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC16.22■□□□□ 0.19
Chd3B1AR17 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Chd3B1AR17 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC16.22■□□□□ 0.19
Chd3B1AR17 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC16.22■□□□□ 0.19
Chd3B1AR17 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC16.22■□□□□ 0.19
Chd3B1AR17 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Chd3B1AR17 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd3B1AR17 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC16.21■□□□□ 0.19
Chd3B1AR17 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd3B1AR17 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Chd3B1AR17 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd3B1AR17 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Chd3B1AR17 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd3B1AR17 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC16.21■□□□□ 0.19
Chd3B1AR17 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC16.21■□□□□ 0.19
Chd3B1AR17 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC16.21■□□□□ 0.19
Chd3B1AR17 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Chd3B1AR17 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd3B1AR17 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd3B1AR17 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Chd3B1AR17 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Chd3B1AR17 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Chd3B1AR17 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Chd3B1AR17 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Chd3B1AR17 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Chd3B1AR17 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Chd3B1AR17 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Chd3B1AR17 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Chd3B1AR17 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.2■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms