Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Gm13312-201ENSMUST00000119631 718 ntBASIC18.35■□□□□ 0.53
Rpap3Q9D706 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC18.35■□□□□ 0.53
Rpap3Q9D706 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.35■□□□□ 0.53
Rpap3Q9D706 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rpap3Q9D706 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rpap3Q9D706 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC18.34■□□□□ 0.53
Rpap3Q9D706 Gm24589-201ENSMUST00000116692 94 ntBASIC18.34■□□□□ 0.53
Rpap3Q9D706 Gm15372-201ENSMUST00000120729 834 ntBASIC18.34■□□□□ 0.53
Rpap3Q9D706 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rpap3Q9D706 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rpap3Q9D706 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.34■□□□□ 0.53
Rpap3Q9D706 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Rpap3Q9D706 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Rpap3Q9D706 Gm15442-201ENSMUST00000117905 1527 ntBASIC18.33■□□□□ 0.53
Rpap3Q9D706 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Rpap3Q9D706 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Rpap3Q9D706 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC18.33■□□□□ 0.52
Rpap3Q9D706 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Rpap3Q9D706 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC18.33■□□□□ 0.52
Rpap3Q9D706 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Rpap3Q9D706 AC153794.1-201ENSMUST00000169148 126 ntBASIC18.33■□□□□ 0.52
Rpap3Q9D706 Gm34391-201ENSMUST00000203706 907 ntBASIC18.33■□□□□ 0.52
Rpap3Q9D706 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Rpap3Q9D706 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rpap3Q9D706 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Rpap3Q9D706 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rpap3Q9D706 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Rpap3Q9D706 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rpap3Q9D706 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rpap3Q9D706 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rpap3Q9D706 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Rpap3Q9D706 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.32■□□□□ 0.52
Rpap3Q9D706 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Birc2-201ENSMUST00000054878 378 ntBASIC18.32■□□□□ 0.52
Rpap3Q9D706 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpap3Q9D706 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Rprl3-201ENSMUST00000157400 290 ntBASIC18.31■□□□□ 0.52
Rpap3Q9D706 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rpap3Q9D706 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Rpap3Q9D706 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpap3Q9D706 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms