Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Gm10849-201ENSMUST00000100397 618 ntBASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Gm15375-201ENSMUST00000119510 849 ntBASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc28bQ8CEG5 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc28bQ8CEG5 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC16.52■□□□□ 0.23
Ccdc28bQ8CEG5 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC16.52■□□□□ 0.23
Ccdc28bQ8CEG5 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Ccdc28bQ8CEG5 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc28bQ8CEG5 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
Ccdc28bQ8CEG5 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ccdc28bQ8CEG5 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
Ccdc28bQ8CEG5 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Gm5408-201ENSMUST00000197998 747 ntBASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ccdc28bQ8CEG5 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
Ccdc28bQ8CEG5 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC16.48■□□□□ 0.23
Ccdc28bQ8CEG5 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ccdc28bQ8CEG5 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms