Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddb1Q3U1J4 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddb1Q3U1J4 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ddb1Q3U1J4 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC21.17■□□□□ 0.98
Ddb1Q3U1J4 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddb1Q3U1J4 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddb1Q3U1J4 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Gm3928-201ENSMUST00000121141 1307 ntBASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Gm8655-201ENSMUST00000221159 852 ntBASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Bloc1s5-203ENSMUST00000224902 612 ntBASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ddb1Q3U1J4 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddb1Q3U1J4 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddb1Q3U1J4 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddb1Q3U1J4 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Ddb1Q3U1J4 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC21.14■□□□□ 0.98
Ddb1Q3U1J4 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddb1Q3U1J4 AL590614.2-201ENSMUST00000225374 1937 ntBASIC21.14■□□□□ 0.98
Ddb1Q3U1J4 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Gm15920-201ENSMUST00000118998 402 ntBASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC21.14■□□□□ 0.97
Ddb1Q3U1J4 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Mir3113-201ENSMUST00000175478 76 ntBASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Ddb1Q3U1J4 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC21.12■□□□□ 0.97
Ddb1Q3U1J4 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms