Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC16.31■□□□□ 0.2
Col9a1Q05722 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.31■□□□□ 0.2
Col9a1Q05722 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.31■□□□□ 0.2
Col9a1Q05722 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Col9a1Q05722 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col9a1Q05722 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 Gm11873-201ENSMUST00000117877 1304 ntBASIC16.3■□□□□ 0.2
Col9a1Q05722 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Col9a1Q05722 Klra4-201ENSMUST00000119096 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC16.3■□□□□ 0.2
Col9a1Q05722 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Col9a1Q05722 Vmn1r-ps10-201ENSMUST00000176165 889 ntBASIC16.3■□□□□ 0.2
Col9a1Q05722 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC16.3■□□□□ 0.2
Col9a1Q05722 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC16.3■□□□□ 0.2
Col9a1Q05722 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Col9a1Q05722 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
Col9a1Q05722 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.3■□□□□ 0.2
Col9a1Q05722 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col9a1Q05722 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC16.3■□□□□ 0.2
Col9a1Q05722 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col9a1Q05722 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col9a1Q05722 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col9a1Q05722 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC16.29■□□□□ 0.2
Col9a1Q05722 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC16.29■□□□□ 0.2
Col9a1Q05722 AC154634.3-201ENSMUST00000224589 736 ntBASIC16.29■□□□□ 0.2
Col9a1Q05722 AC126408.1-201ENSMUST00000225184 523 ntBASIC16.29■□□□□ 0.2
Col9a1Q05722 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Col9a1Q05722 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col9a1Q05722 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Col9a1Q05722 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Col9a1Q05722 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.28■□□□□ 0.2
Col9a1Q05722 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC16.28■□□□□ 0.2
Col9a1Q05722 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.28■□□□□ 0.2
Col9a1Q05722 Pid1-205ENSMUST00000176720 450 ntTSL 5 BASIC16.28■□□□□ 0.2
Col9a1Q05722 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Gm9794-201ENSMUST00000202370 423 ntBASIC16.28■□□□□ 0.2
Col9a1Q05722 AC140397.2-201ENSMUST00000224213 834 ntBASIC16.28■□□□□ 0.2
Col9a1Q05722 Mrgpra4-201ENSMUST00000087092 1259 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Col9a1Q05722 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC16.28■□□□□ 0.2
Col9a1Q05722 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Col9a1Q05722 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Col9a1Q05722 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col9a1Q05722 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col9a1Q05722 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col9a1Q05722 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col9a1Q05722 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col9a1Q05722 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC16.27■□□□□ 0.2
Col9a1Q05722 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col9a1Q05722 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Col9a1Q05722 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col9a1Q05722 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col9a1Q05722 Mir7085-201ENSMUST00000184353 66 ntBASIC16.27■□□□□ 0.2
Col9a1Q05722 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC16.27■□□□□ 0.2
Col9a1Q05722 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC16.27■□□□□ 0.2
Col9a1Q05722 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC16.27■□□□□ 0.2
Col9a1Q05722 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Col9a1Q05722 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col9a1Q05722 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms