Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Msh3P13705 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Msh3P13705 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.34■□□□□ 0.53
Msh3P13705 Gm10231-201ENSMUST00000181584 441 ntBASIC18.34■□□□□ 0.53
Msh3P13705 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 Gm10175-202ENSMUST00000208752 441 ntBASIC18.34■□□□□ 0.53
Msh3P13705 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Msh3P13705 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.34■□□□□ 0.53
Msh3P13705 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh3P13705 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Msh3P13705 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Msh3P13705 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Msh3P13705 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Msh3P13705 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Msh3P13705 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Msh3P13705 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Msh3P13705 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Msh3P13705 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.33■□□□□ 0.52
Msh3P13705 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Msh3P13705 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Msh3P13705 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Msh3P13705 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC18.32■□□□□ 0.52
Msh3P13705 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Msh3P13705 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Gm22697-201ENSMUST00000175194 63 ntBASIC18.32■□□□□ 0.52
Msh3P13705 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Msh3P13705 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.32■□□□□ 0.52
Msh3P13705 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh3P13705 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.31■□□□□ 0.52
Msh3P13705 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Msh3P13705 Gm27389-201ENSMUST00000183622 195 ntBASIC18.31■□□□□ 0.52
Msh3P13705 Gm37722-201ENSMUST00000193757 208 ntBASIC18.31■□□□□ 0.52
Msh3P13705 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Msh3P13705 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Msh3P13705 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Msh3P13705 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC18.31■□□□□ 0.52
Msh3P13705 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh3P13705 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC18.31■□□□□ 0.52
Msh3P13705 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh3P13705 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Msh3P13705 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms