Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Msx1P13297 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Msx1P13297 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC15.79■□□□□ 0.12
Msx1P13297 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
Msx1P13297 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC15.79■□□□□ 0.12
Msx1P13297 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC15.79■□□□□ 0.12
Msx1P13297 Gm43514-201ENSMUST00000198852 424 ntBASIC15.79■□□□□ 0.12
Msx1P13297 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC15.79■□□□□ 0.12
Msx1P13297 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Msx1P13297 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Msx1P13297 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Msx1P13297 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Msx1P13297 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Msx1P13297 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Msx1P13297 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Msx1P13297 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Msx1P13297 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Msx1P13297 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Msx1P13297 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Msx1P13297 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Msx1P13297 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Msx1P13297 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Msx1P13297 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC15.77■□□□□ 0.12
Msx1P13297 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Msx1P13297 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC15.77■□□□□ 0.12
Msx1P13297 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC15.77■□□□□ 0.12
Msx1P13297 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.77■□□□□ 0.12
Msx1P13297 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC15.77■□□□□ 0.12
Msx1P13297 Gm27742-201ENSMUST00000184667 60 ntBASIC15.77■□□□□ 0.12
Msx1P13297 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Msx1P13297 Gm18115-201ENSMUST00000221209 621 ntBASIC15.77■□□□□ 0.12
Msx1P13297 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 Spr-ps1-201ENSMUST00000089584 605 ntBASIC15.77■□□□□ 0.12
Msx1P13297 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Msx1P13297 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Msx1P13297 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Msx1P13297 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
Msx1P13297 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Msx1P13297 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Msx1P13297 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC15.77■□□□□ 0.11
Msx1P13297 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
Msx1P13297 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Msx1P13297 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Msx1P13297 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Msx1P13297 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Msx1P13297 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Msx1P13297 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Msx1P13297 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC15.76■□□□□ 0.11
Msx1P13297 Gm26039-201ENSMUST00000158152 144 ntBASIC15.76■□□□□ 0.11
Msx1P13297 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Msx1P13297 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC15.76■□□□□ 0.11
Msx1P13297 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC15.76■□□□□ 0.11
Msx1P13297 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Msx1P13297 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Msx1P13297 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
Msx1P13297 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Msx1P13297 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Msx1P13297 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Msx1P13297 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Msx1P13297 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Msx1P13297 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Msx1P13297 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC15.75■□□□□ 0.11
Msx1P13297 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Msx1P13297 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Msx1P13297 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms