Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Chmp6P0C0A3 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Gm16499-203ENSMUST00000204633 2177 ntBASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp6P0C0A3 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.15■□□□□ 0.5
Chmp6P0C0A3 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.14■□□□□ 0.49
Chmp6P0C0A3 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Gm16061-201ENSMUST00000122167 857 ntBASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Gm45058-201ENSMUST00000205810 766 ntBASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 AC121577.1-201ENSMUST00000227302 707 ntBASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC18.14■□□□□ 0.49
Chmp6P0C0A3 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Gm10231-201ENSMUST00000181584 441 ntBASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Gm10175-202ENSMUST00000208752 441 ntBASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp6P0C0A3 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms