Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC13.9□□□□□ -0.19
Hmgb3O54879 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
Hmgb3O54879 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC13.89□□□□□ -0.19
Hmgb3O54879 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Hmgb3O54879 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC13.89□□□□□ -0.19
Hmgb3O54879 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Hmgb3O54879 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Hmgb3O54879 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Hmgb3O54879 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
Hmgb3O54879 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Hmgb3O54879 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Hmgb3O54879 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Hmgb3O54879 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC13.89□□□□□ -0.19
Hmgb3O54879 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Hmgb3O54879 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Hmgb3O54879 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Hmgb3O54879 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Hmgb3O54879 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Hmgb3O54879 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC13.88□□□□□ -0.19
Hmgb3O54879 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
Hmgb3O54879 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC13.88□□□□□ -0.19
Hmgb3O54879 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Hmgb3O54879 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Gm36858-201ENSMUST00000194501 2391 ntBASIC13.88□□□□□ -0.19
Hmgb3O54879 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hmgb3O54879 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC13.88□□□□□ -0.19
Hmgb3O54879 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
Hmgb3O54879 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC13.87□□□□□ -0.19
Hmgb3O54879 AC108858.1-201ENSMUST00000228461 1498 ntBASIC13.87□□□□□ -0.19
Hmgb3O54879 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC13.87□□□□□ -0.19
Hmgb3O54879 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC13.87□□□□□ -0.19
Hmgb3O54879 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC13.87□□□□□ -0.19
Hmgb3O54879 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC13.87□□□□□ -0.19
Hmgb3O54879 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Hmgb3O54879 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
Hmgb3O54879 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
Hmgb3O54879 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Hmgb3O54879 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hmgb3O54879 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Hmgb3O54879 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Hmgb3O54879 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC13.86□□□□□ -0.19
Hmgb3O54879 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb3O54879 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Hmgb3O54879 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC13.85□□□□□ -0.19
Hmgb3O54879 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Hmgb3O54879 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Hmgb3O54879 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms