Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Gm8825-201ENSMUST00000182565 998 ntBASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Mir6990-201ENSMUST00000183724 91 ntBASIC18.98■□□□□ 0.63
Upf1Q9EPU0 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf1Q9EPU0 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Gm15222-202ENSMUST00000228667 1726 ntBASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Gm43433-201ENSMUST00000196573 481 ntBASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Gm45167-201ENSMUST00000208007 322 ntBASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Upf1Q9EPU0 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Gm8349-201ENSMUST00000182720 1003 ntBASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 AC125350.2-201ENSMUST00000224737 727 ntBASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Nrn1-204ENSMUST00000224323 1779 ntBASIC18.96■□□□□ 0.63
Upf1Q9EPU0 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Mir449b-201ENSMUST00000104833 80 ntBASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Rassf8-202ENSMUST00000058538 1131 ntBASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
Upf1Q9EPU0 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Gtpbp10-211ENSMUST00000198799 648 ntBASIC18.94■□□□□ 0.62
Upf1Q9EPU0 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Cdk7-205ENSMUST00000225990 1159 ntBASIC18.94■□□□□ 0.62
Upf1Q9EPU0 AC132467.2-202ENSMUST00000227726 559 ntBASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Upf1Q9EPU0 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Gm34220-201ENSMUST00000223001 2709 ntBASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Gm4899-201ENSMUST00000178708 719 ntBASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Gm27430-201ENSMUST00000184585 107 ntBASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Gm44333-201ENSMUST00000197168 107 ntBASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Upf1Q9EPU0 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Upf1Q9EPU0 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms