Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Vps28Q9D1C8 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps28Q9D1C8 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Vps28Q9D1C8 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Vps28Q9D1C8 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Vps28Q9D1C8 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps28Q9D1C8 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps28Q9D1C8 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.12■□□□□ 0.33
Vps28Q9D1C8 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Gm11355-201ENSMUST00000121120 306 ntBASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Gm25016-201ENSMUST00000158399 131 ntBASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Tfap2a-209ENSMUST00000225180 1828 ntBASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Vps28Q9D1C8 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms