Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Mir5130-201ENSMUST00000175160 84 ntBASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Gm2274-201ENSMUST00000184539 609 ntBASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.68■□□□□ 0.58
Smc1aQ9CU62 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smc1aQ9CU62 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
Smc1aQ9CU62 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Gm6345-202ENSMUST00000180900 204 ntBASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smc1aQ9CU62 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.65■□□□□ 0.58
Smc1aQ9CU62 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Smc1aQ9CU62 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Smc1aQ9CU62 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Gm33142-201ENSMUST00000193913 867 ntBASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smc1aQ9CU62 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms