Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim11Q99PQ2 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim11Q99PQ2 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Gm43353-201ENSMUST00000199224 1295 ntBASIC19.02■□□□□ 0.64
Trim11Q99PQ2 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.02■□□□□ 0.64
Trim11Q99PQ2 AC135963.1-201ENSMUST00000211640 717 ntBASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim11Q99PQ2 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Trim11Q99PQ2 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Trim11Q99PQ2 AC154855.1-201ENSMUST00000227353 1458 ntBASIC19.02■□□□□ 0.63
Trim11Q99PQ2 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trim11Q99PQ2 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim11Q99PQ2 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
Trim11Q99PQ2 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Trim11Q99PQ2 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC19■□□□□ 0.63
Trim11Q99PQ2 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19■□□□□ 0.63
Trim11Q99PQ2 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19■□□□□ 0.63
Trim11Q99PQ2 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC19■□□□□ 0.63
Trim11Q99PQ2 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim11Q99PQ2 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms