Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Gm44430-201ENSMUST00000203376 995 ntBASIC23.56■■□□□ 1.36
Usp47Q8BY87 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp47Q8BY87 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp47Q8BY87 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC23.55■■□□□ 1.36
Usp47Q8BY87 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Gm8839-201ENSMUST00000121279 1645 ntBASIC23.54■■□□□ 1.36
Usp47Q8BY87 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
Usp47Q8BY87 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
Usp47Q8BY87 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Usp47Q8BY87 AC124569.2-201ENSMUST00000225998 818 ntBASIC23.52■■□□□ 1.36
Usp47Q8BY87 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC23.52■■□□□ 1.36
Usp47Q8BY87 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Usp47Q8BY87 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Usp47Q8BY87 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Usp47Q8BY87 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Usp47Q8BY87 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Usp47Q8BY87 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC23.51■■□□□ 1.35
Usp47Q8BY87 Gm13216-201ENSMUST00000117145 591 ntBASIC23.51■■□□□ 1.35
Usp47Q8BY87 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Usp47Q8BY87 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Usp47Q8BY87 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Usp47Q8BY87 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Usp47Q8BY87 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Usp47Q8BY87 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC23.5■■□□□ 1.35
Usp47Q8BY87 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Usp47Q8BY87 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC23.5■■□□□ 1.35
Usp47Q8BY87 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
Usp47Q8BY87 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Usp47Q8BY87 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 CT009713.7-201ENSMUST00000224689 571 ntBASIC23.49■■□□□ 1.35
Usp47Q8BY87 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Usp47Q8BY87 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms