Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx58Q6Q899 Spr-ps1-201ENSMUST00000089584 605 ntBASIC20.67■□□□□ 0.9
Ddx58Q6Q899 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx58Q6Q899 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Ddx58Q6Q899 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx58Q6Q899 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx58Q6Q899 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx58Q6Q899 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC20.67■□□□□ 0.9
Ddx58Q6Q899 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx58Q6Q899 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC20.66■□□□□ 0.9
Ddx58Q6Q899 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Gm10052-201ENSMUST00000168019 960 ntBASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Gm7729-201ENSMUST00000050143 801 ntBASIC20.65■□□□□ 0.9
Ddx58Q6Q899 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx58Q6Q899 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddx58Q6Q899 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddx58Q6Q899 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddx58Q6Q899 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 AC153889.1-201ENSMUST00000219257 330 ntBASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx58Q6Q899 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Gm12895-201ENSMUST00000122214 226 ntBASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Gm44430-201ENSMUST00000203376 995 ntBASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx58Q6Q899 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.62■□□□□ 0.89
Ddx58Q6Q899 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms