Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Nr1h4Q60641 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Nr1h4Q60641 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Nr1h4Q60641 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Nr1h4Q60641 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Nr1h4Q60641 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Nr1h4Q60641 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Nr1h4Q60641 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
Nr1h4Q60641 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Nr1h4Q60641 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Nr1h4Q60641 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
Nr1h4Q60641 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Nr1h4Q60641 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Gm42545-201ENSMUST00000202755 922 ntBASIC15.95■□□□□ 0.14
Nr1h4Q60641 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Nr1h4Q60641 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Gm37179-201ENSMUST00000194862 823 ntBASIC15.94■□□□□ 0.14
Nr1h4Q60641 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Nr1h4Q60641 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Gm20628-201ENSMUST00000177363 3215 ntBASIC15.93■□□□□ 0.14
Nr1h4Q60641 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Gm12382-201ENSMUST00000122005 922 ntBASIC15.93■□□□□ 0.14
Nr1h4Q60641 Gm24841-201ENSMUST00000158676 357 ntBASIC15.93■□□□□ 0.14
Nr1h4Q60641 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.93■□□□□ 0.14
Nr1h4Q60641 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Gm10517-202ENSMUST00000192970 758 ntBASIC15.92■□□□□ 0.14
Nr1h4Q60641 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC15.92■□□□□ 0.14
Nr1h4Q60641 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC15.92■□□□□ 0.14
Nr1h4Q60641 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC15.92■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms