Protein–RNA interactions for Protein: Q5U4C3

Scaf1, Splicing factor, arginine/serine-rich 19, mousemouse

Known RBP Predictions only

Length 1,256 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf1Q5U4C3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Gm12497-201ENSMUST00000138778 237 ntBASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Gm10060-201ENSMUST00000212002 111 ntBASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Gm16499-203ENSMUST00000204633 2177 ntBASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scaf1Q5U4C3 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Gm9172-201ENSMUST00000212092 954 ntBASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scaf1Q5U4C3 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC21.77■■□□□ 1.07
Scaf1Q5U4C3 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Scaf1Q5U4C3 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Scaf1Q5U4C3 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Gm18856-201ENSMUST00000178096 1374 ntBASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scaf1Q5U4C3 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scaf1Q5U4C3 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scaf1Q5U4C3 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scaf1Q5U4C3 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Scaf1Q5U4C3 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Scaf1Q5U4C3 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scaf1Q5U4C3 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Scaf1Q5U4C3 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scaf1Q5U4C3 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scaf1Q5U4C3 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Gm25745-201ENSMUST00000174945 133 ntBASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Gm8349-201ENSMUST00000182720 1003 ntBASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Cmtm5-203ENSMUST00000227441 610 ntBASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Scaf1Q5U4C3 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Gm4535-201ENSMUST00000182274 558 ntBASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Gm10355-201ENSMUST00000097146 517 ntBASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Gm5953-201ENSMUST00000220644 2616 ntBASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scaf1Q5U4C3 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms