Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Gm44832-201ENSMUST00000208849 2303 ntBASIC14.24□□□□□ -0.13
Col8a1Q00780 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Gm45906-201ENSMUST00000208911 1430 ntBASIC14.24□□□□□ -0.13
Col8a1Q00780 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Col8a1Q00780 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Col8a1Q00780 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC14.23□□□□□ -0.13
Col8a1Q00780 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Col8a1Q00780 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm23935-201ENSMUST00000102303 57 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm24270-201ENSMUST00000102326 57 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm24245-201ENSMUST00000157318 57 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Col8a1Q00780 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Col8a1Q00780 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44357-201ENSMUST00000195897 142 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm19658-201ENSMUST00000196231 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44367-201ENSMUST00000196836 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44350-201ENSMUST00000197197 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44390-201ENSMUST00000197533 144 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44313-201ENSMUST00000198018 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44486-201ENSMUST00000198508 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44454-201ENSMUST00000198541 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44314-201ENSMUST00000199263 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44394-201ENSMUST00000199558 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44484-201ENSMUST00000199873 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44466-201ENSMUST00000200264 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Gm44359-201ENSMUST00000200671 138 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 CT943659.1-201ENSMUST00000215459 326 ntBASIC14.23□□□□□ -0.13
Col8a1Q00780 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Col8a1Q00780 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Col8a1Q00780 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC14.23□□□□□ -0.13
Col8a1Q00780 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col8a1Q00780 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC14.23□□□□□ -0.13
Col8a1Q00780 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col8a1Q00780 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC14.22□□□□□ -0.13
Col8a1Q00780 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.22□□□□□ -0.13
Col8a1Q00780 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
Col8a1Q00780 Gm27867-201ENSMUST00000184778 125 ntBASIC14.22□□□□□ -0.13
Col8a1Q00780 Gm10060-201ENSMUST00000212002 111 ntBASIC14.22□□□□□ -0.13
Col8a1Q00780 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.22□□□□□ -0.13
Col8a1Q00780 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
Col8a1Q00780 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Col8a1Q00780 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Gm32996-201ENSMUST00000199828 1447 ntBASIC14.22□□□□□ -0.13
Col8a1Q00780 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Tgds-204ENSMUST00000228543 1594 ntBASIC14.22□□□□□ -0.13
Col8a1Q00780 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col8a1Q00780 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Col8a1Q00780 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col8a1Q00780 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC14.21□□□□□ -0.13
Col8a1Q00780 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC14.21□□□□□ -0.13
Col8a1Q00780 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col8a1Q00780 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col8a1Q00780 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col8a1Q00780 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Col8a1Q00780 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col8a1Q00780 AC125350.1-201ENSMUST00000225115 903 ntBASIC14.21□□□□□ -0.13
Col8a1Q00780 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Col8a1Q00780 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.21□□□□□ -0.13
Col8a1Q00780 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Col8a1Q00780 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col8a1Q00780 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col8a1Q00780 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms