Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
Lig3P97386 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.2■□□□□ 0.5
Lig3P97386 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.2■□□□□ 0.5
Lig3P97386 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 Mzt1-203ENSMUST00000227948 952 ntBASIC18.2■□□□□ 0.5
Lig3P97386 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.2■□□□□ 0.5
Lig3P97386 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lig3P97386 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.19■□□□□ 0.5
Lig3P97386 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Lig3P97386 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Lig3P97386 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Lig3P97386 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.19■□□□□ 0.5
Lig3P97386 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Lig3P97386 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.19■□□□□ 0.5
Lig3P97386 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC18.19■□□□□ 0.5
Lig3P97386 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Lig3P97386 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
Lig3P97386 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lig3P97386 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lig3P97386 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
Lig3P97386 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Lig3P97386 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Lig3P97386 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC18.18■□□□□ 0.5
Lig3P97386 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lig3P97386 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Lig3P97386 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Lig3P97386 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lig3P97386 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.18■□□□□ 0.5
Lig3P97386 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lig3P97386 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.18■□□□□ 0.5
Lig3P97386 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lig3P97386 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lig3P97386 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lig3P97386 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC18.18■□□□□ 0.5
Lig3P97386 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Lig3P97386 Gm9867-201ENSMUST00000192212 2647 ntBASIC18.18■□□□□ 0.5
Lig3P97386 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Lig3P97386 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Lig3P97386 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC18.17■□□□□ 0.5
Lig3P97386 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Lig3P97386 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lig3P97386 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
Lig3P97386 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC18.16■□□□□ 0.5
Lig3P97386 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC18.16■□□□□ 0.5
Lig3P97386 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lig3P97386 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lig3P97386 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Lig3P97386 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lig3P97386 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC18.15■□□□□ 0.5
Lig3P97386 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.15■□□□□ 0.5
Lig3P97386 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Lig3P97386 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lig3P97386 Mir1668-201ENSMUST00000184114 107 ntBASIC18.15■□□□□ 0.5
Lig3P97386 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC18.15■□□□□ 0.5
Lig3P97386 Gm8969-201ENSMUST00000199694 526 ntBASIC18.15■□□□□ 0.5
Lig3P97386 Gm6443-201ENSMUST00000203599 874 ntBASIC18.15■□□□□ 0.5
Lig3P97386 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.15■□□□□ 0.5
Lig3P97386 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC18.15■□□□□ 0.5
Lig3P97386 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lig3P97386 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Lig3P97386 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lig3P97386 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lig3P97386 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms