Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb1P63158 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb1P63158 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb1P63158 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb1P63158 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.37■□□□□ 0.53
Hmgb1P63158 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Hmgb1P63158 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb1P63158 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC18.36■□□□□ 0.53
Hmgb1P63158 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.36■□□□□ 0.53
Hmgb1P63158 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Hmgb1P63158 Gm7791-201ENSMUST00000219066 539 ntBASIC18.36■□□□□ 0.53
Hmgb1P63158 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb1P63158 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC18.35■□□□□ 0.53
Hmgb1P63158 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Hmgb1P63158 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Hmgb1P63158 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.35■□□□□ 0.53
Hmgb1P63158 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Hmgb1P63158 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Hmgb1P63158 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Hmgb1P63158 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb1P63158 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.34■□□□□ 0.53
Hmgb1P63158 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.34■□□□□ 0.53
Hmgb1P63158 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb1P63158 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb1P63158 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb1P63158 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
Hmgb1P63158 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb1P63158 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb1P63158 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC18.34■□□□□ 0.53
Hmgb1P63158 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb1P63158 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Hmgb1P63158 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb1P63158 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb1P63158 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb1P63158 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Hmgb1P63158 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb1P63158 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb1P63158 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb1P63158 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb1P63158 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb1P63158 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb1P63158 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb1P63158 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb1P63158 Gm715-201ENSMUST00000117865 831 ntBASIC18.33■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms