Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.03■□□□□ 0.8
Rfx1P48377 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Rfx1P48377 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC20.03■□□□□ 0.8
Rfx1P48377 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Rfx1P48377 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfx1P48377 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfx1P48377 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Rfx1P48377 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfx1P48377 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfx1P48377 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Rfx1P48377 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.02■□□□□ 0.8
Rfx1P48377 Gm18025-201ENSMUST00000221733 862 ntBASIC20.02■□□□□ 0.8
Rfx1P48377 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Rfx1P48377 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Rfx1P48377 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
Rfx1P48377 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfx1P48377 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfx1P48377 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfx1P48377 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Rfx1P48377 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfx1P48377 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
Rfx1P48377 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
Rfx1P48377 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.01■□□□□ 0.79
Rfx1P48377 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Gm4974-201ENSMUST00000209974 875 ntBASIC20.01■□□□□ 0.79
Rfx1P48377 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Rfx1P48377 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC20.01■□□□□ 0.79
Rfx1P48377 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfx1P48377 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC20■□□□□ 0.79
Rfx1P48377 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
Rfx1P48377 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Rfx1P48377 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Rfx1P48377 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Rfx1P48377 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Rfx1P48377 Gm8495-201ENSMUST00000188740 694 ntBASIC20■□□□□ 0.79
Rfx1P48377 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20■□□□□ 0.79
Rfx1P48377 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Rfx1P48377 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20■□□□□ 0.79
Rfx1P48377 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20■□□□□ 0.79
Rfx1P48377 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC20■□□□□ 0.79
Rfx1P48377 Gm21596-201ENSMUST00000178049 1316 ntBASIC20■□□□□ 0.79
Rfx1P48377 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC20■□□□□ 0.79
Rfx1P48377 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Rfx1P48377 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Rfx1P48377 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.99■□□□□ 0.79
Rfx1P48377 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC19.99■□□□□ 0.79
Rfx1P48377 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Rfx1P48377 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Rfx1P48377 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
Rfx1P48377 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Rfx1P48377 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Rfx1P48377 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Rfx1P48377 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.98■□□□□ 0.79
Rfx1P48377 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC19.98■□□□□ 0.79
Rfx1P48377 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Rfx1P48377 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Rfx1P48377 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Rfx1P48377 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC19.97■□□□□ 0.79
Rfx1P48377 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Rfx1P48377 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Rfx1P48377 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms