Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC15.84■□□□□ 0.13
Msx1P13297 Mzt1-203ENSMUST00000227948 952 ntBASIC15.84■□□□□ 0.13
Msx1P13297 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Msx1P13297 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
Msx1P13297 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC15.84■□□□□ 0.13
Msx1P13297 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msx1P13297 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
Msx1P13297 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Msx1P13297 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Msx1P13297 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Msx1P13297 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
Msx1P13297 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.12
Msx1P13297 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC15.83■□□□□ 0.12
Msx1P13297 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC15.83■□□□□ 0.12
Msx1P13297 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Msx1P13297 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msx1P13297 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC15.82■□□□□ 0.12
Msx1P13297 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Msx1P13297 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Msx1P13297 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Msx1P13297 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC15.82■□□□□ 0.12
Msx1P13297 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC15.82■□□□□ 0.12
Msx1P13297 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Gm9731-201ENSMUST00000209480 747 ntBASIC15.82■□□□□ 0.12
Msx1P13297 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Gm5867-201ENSMUST00000063197 592 ntBASIC15.82■□□□□ 0.12
Msx1P13297 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Msx1P13297 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Msx1P13297 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Msx1P13297 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msx1P13297 Gm16499-203ENSMUST00000204633 2177 ntBASIC15.82■□□□□ 0.12
Msx1P13297 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
Msx1P13297 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Msx1P13297 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Gm24589-201ENSMUST00000116692 94 ntBASIC15.81■□□□□ 0.12
Msx1P13297 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
Msx1P13297 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
Msx1P13297 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Il3ra-202ENSMUST00000223589 738 ntBASIC15.81■□□□□ 0.12
Msx1P13297 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Msx1P13297 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msx1P13297 Tfap2a-209ENSMUST00000225180 1828 ntBASIC15.8■□□□□ 0.12
Msx1P13297 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC15.8■□□□□ 0.12
Msx1P13297 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
Msx1P13297 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Msx1P13297 Gm25925-201ENSMUST00000158314 306 ntBASIC15.8■□□□□ 0.12
Msx1P13297 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.8■□□□□ 0.12
Msx1P13297 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
Msx1P13297 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Msx1P13297 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms