Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.03■□□□□ 0.48
Vti1aO89116 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Mir3081-201ENSMUST00000175305 84 ntBASIC18.03■□□□□ 0.48
Vti1aO89116 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Vti1aO89116 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.03■□□□□ 0.48
Vti1aO89116 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Vti1aO89116 Actl10-202ENSMUST00000226583 1501 ntBASIC18.03■□□□□ 0.48
Vti1aO89116 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.02■□□□□ 0.48
Vti1aO89116 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC18.02■□□□□ 0.48
Vti1aO89116 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.02■□□□□ 0.48
Vti1aO89116 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vti1aO89116 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vti1aO89116 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Vti1aO89116 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vti1aO89116 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Vti1aO89116 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Vti1aO89116 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.02■□□□□ 0.48
Vti1aO89116 Gm7153-201ENSMUST00000117092 455 ntBASIC18.02■□□□□ 0.48
Vti1aO89116 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Vti1aO89116 Gm37722-201ENSMUST00000193757 208 ntBASIC18.02■□□□□ 0.48
Vti1aO89116 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Vti1aO89116 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.02■□□□□ 0.48
Vti1aO89116 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.02■□□□□ 0.48
Vti1aO89116 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vti1aO89116 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vti1aO89116 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Vti1aO89116 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vti1aO89116 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vti1aO89116 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Vti1aO89116 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Vti1aO89116 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vti1aO89116 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vti1aO89116 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Vti1aO89116 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Vti1aO89116 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Vti1aO89116 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Vti1aO89116 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vti1aO89116 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 Gm19721-201ENSMUST00000195284 1764 ntBASIC18■□□□□ 0.47
Vti1aO89116 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18■□□□□ 0.47
Vti1aO89116 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18■□□□□ 0.47
Vti1aO89116 Gm11860-201ENSMUST00000122346 1010 ntBASIC18■□□□□ 0.47
Vti1aO89116 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18■□□□□ 0.47
Vti1aO89116 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Vti1aO89116 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18■□□□□ 0.47
Vti1aO89116 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vti1aO89116 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC18■□□□□ 0.47
Vti1aO89116 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Vti1aO89116 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Vti1aO89116 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.99■□□□□ 0.47
Vti1aO89116 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC17.99■□□□□ 0.47
Vti1aO89116 Gm27742-201ENSMUST00000184667 60 ntBASIC17.99■□□□□ 0.47
Vti1aO89116 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vti1aO89116 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.98■□□□□ 0.47
Vti1aO89116 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vti1aO89116 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vti1aO89116 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vti1aO89116 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.98■□□□□ 0.47
Vti1aO89116 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Vti1aO89116 Gm45328-201ENSMUST00000210942 917 ntBASIC17.98■□□□□ 0.47
Vti1aO89116 AC133598.3-202ENSMUST00000224219 531 ntBASIC17.98■□□□□ 0.47
Vti1aO89116 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vti1aO89116 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Vti1aO89116 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms