Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf1Q9EPU0 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf1Q9EPU0 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Upf1Q9EPU0 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf1Q9EPU0 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC19.04■□□□□ 0.64
Upf1Q9EPU0 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Gm5682-201ENSMUST00000173402 505 ntBASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf1Q9EPU0 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Gm17968-201ENSMUST00000194902 784 ntBASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Gm45612-201ENSMUST00000211320 160 ntBASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Upf1Q9EPU0 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
Upf1Q9EPU0 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Upf1Q9EPU0 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 AC126408.1-201ENSMUST00000225184 523 ntBASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Idnk-204ENSMUST00000226010 1898 ntBASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Upf1Q9EPU0 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC19■□□□□ 0.63
Upf1Q9EPU0 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC19■□□□□ 0.63
Upf1Q9EPU0 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC19■□□□□ 0.63
Upf1Q9EPU0 Gm9172-201ENSMUST00000212092 954 ntBASIC19■□□□□ 0.63
Upf1Q9EPU0 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC19■□□□□ 0.63
Upf1Q9EPU0 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Upf1Q9EPU0 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19■□□□□ 0.63
Upf1Q9EPU0 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Gm43474-201ENSMUST00000196415 774 ntBASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Gm18187-201ENSMUST00000196476 984 ntBASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf1Q9EPU0 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms