Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Gm16061-201ENSMUST00000122167 857 ntBASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Haglr-201ENSMUST00000100000 2085 ntBASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Gm13474-201ENSMUST00000122466 815 ntBASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ddx56Q9D0R4 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 AC159205.6-201ENSMUST00000224935 887 ntBASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ddx56Q9D0R4 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ddx56Q9D0R4 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.58■□□□□ 0.41
Ddx56Q9D0R4 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ddx56Q9D0R4 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ddx56Q9D0R4 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ddx56Q9D0R4 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ddx56Q9D0R4 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Ddx56Q9D0R4 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Ddx56Q9D0R4 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.58■□□□□ 0.4
Ddx56Q9D0R4 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ddx56Q9D0R4 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ddx56Q9D0R4 Gm45203-201ENSMUST00000206384 1831 ntBASIC17.58■□□□□ 0.4
Ddx56Q9D0R4 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.58■□□□□ 0.4
Ddx56Q9D0R4 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Gm43799-201ENSMUST00000201845 579 ntBASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.57■□□□□ 0.4
Ddx56Q9D0R4 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Gm13186-201ENSMUST00000118031 316 ntBASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms