Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rtl3Q6P1Y1 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
Rtl3Q6P1Y1 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rtl3Q6P1Y1 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Rtl3Q6P1Y1 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Gm21559-201ENSMUST00000220638 855 ntBASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Gm8587-201ENSMUST00000076538 843 ntBASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Rtl3Q6P1Y1 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rtl3Q6P1Y1 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Gm26039-201ENSMUST00000158152 144 ntBASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rtl3Q6P1Y1 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Ank2-226ENSMUST00000189368 339 ntBASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rtl3Q6P1Y1 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rtl3Q6P1Y1 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rtl3Q6P1Y1 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rtl3Q6P1Y1 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rtl3Q6P1Y1 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rtl3Q6P1Y1 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.29■□□□□ 0.36
Rtl3Q6P1Y1 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.29■□□□□ 0.36
Rtl3Q6P1Y1 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rtl3Q6P1Y1 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rtl3Q6P1Y1 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms