Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.48■□□□□ 0.55
CtcfQ61164 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CtcfQ61164 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.48■□□□□ 0.55
CtcfQ61164 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CtcfQ61164 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC18.48■□□□□ 0.55
CtcfQ61164 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CtcfQ61164 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CtcfQ61164 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CtcfQ61164 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.48■□□□□ 0.55
CtcfQ61164 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CtcfQ61164 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CtcfQ61164 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CtcfQ61164 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CtcfQ61164 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC18.47■□□□□ 0.55
CtcfQ61164 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
CtcfQ61164 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CtcfQ61164 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC18.47■□□□□ 0.55
CtcfQ61164 Gm13216-201ENSMUST00000117145 591 ntBASIC18.47■□□□□ 0.55
CtcfQ61164 Gm10653-202ENSMUST00000139570 835 ntBASIC18.47■□□□□ 0.55
CtcfQ61164 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.47■□□□□ 0.55
CtcfQ61164 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.47■□□□□ 0.55
CtcfQ61164 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CtcfQ61164 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CtcfQ61164 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CtcfQ61164 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC18.47■□□□□ 0.55
CtcfQ61164 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC18.47■□□□□ 0.55
CtcfQ61164 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.46■□□□□ 0.55
CtcfQ61164 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CtcfQ61164 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CtcfQ61164 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.46■□□□□ 0.55
CtcfQ61164 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.46■□□□□ 0.55
CtcfQ61164 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18.46■□□□□ 0.55
CtcfQ61164 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CtcfQ61164 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CtcfQ61164 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CtcfQ61164 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CtcfQ61164 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CtcfQ61164 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CtcfQ61164 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CtcfQ61164 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CtcfQ61164 Gm12085-201ENSMUST00000119263 940 ntBASIC18.45■□□□□ 0.54
CtcfQ61164 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CtcfQ61164 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CtcfQ61164 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CtcfQ61164 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CtcfQ61164 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC18.45■□□□□ 0.54
CtcfQ61164 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.45■□□□□ 0.54
CtcfQ61164 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CtcfQ61164 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
CtcfQ61164 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CtcfQ61164 Gm24841-201ENSMUST00000158676 357 ntBASIC18.44■□□□□ 0.54
CtcfQ61164 AL590614.2-201ENSMUST00000225374 1937 ntBASIC18.44■□□□□ 0.54
CtcfQ61164 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.44■□□□□ 0.54
CtcfQ61164 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Dancr-204ENSMUST00000132389 2347 ntBASIC18.44■□□□□ 0.54
CtcfQ61164 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CtcfQ61164 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CtcfQ61164 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CtcfQ61164 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CtcfQ61164 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CtcfQ61164 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CtcfQ61164 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CtcfQ61164 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.43■□□□□ 0.54
CtcfQ61164 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.43■□□□□ 0.54
CtcfQ61164 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
CtcfQ61164 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CtcfQ61164 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CtcfQ61164 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CtcfQ61164 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms