Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav3-1Q5R1I8 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav3-1Q5R1I8 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav3-1Q5R1I8 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Trav3-1Q5R1I8 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.59
Trav3-1Q5R1I8 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC11.4□□□□□ -0.59
Trav3-1Q5R1I8 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Trav3-1Q5R1I8 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav3-1Q5R1I8 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms