Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC21.23■□□□□ 0.99
Msh6P54276 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Msh6P54276 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Msh6P54276 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC21.23■□□□□ 0.99
Msh6P54276 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC21.23■□□□□ 0.99
Msh6P54276 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh6P54276 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh6P54276 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Msh6P54276 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC21.22■□□□□ 0.99
Msh6P54276 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh6P54276 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Msh6P54276 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC21.22■□□□□ 0.99
Msh6P54276 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh6P54276 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Msh6P54276 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Msh6P54276 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh6P54276 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC21.22■□□□□ 0.99
Msh6P54276 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC21.22■□□□□ 0.99
Msh6P54276 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC21.22■□□□□ 0.99
Msh6P54276 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msh6P54276 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Msh6P54276 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Msh6P54276 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msh6P54276 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msh6P54276 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Msh6P54276 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC21.21■□□□□ 0.99
Msh6P54276 Gm29707-201ENSMUST00000196325 491 ntBASIC21.21■□□□□ 0.99
Msh6P54276 AC107711.5-202ENSMUST00000226429 702 ntBASIC21.21■□□□□ 0.99
Msh6P54276 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Msh6P54276 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msh6P54276 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC21.21■□□□□ 0.99
Msh6P54276 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Msh6P54276 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC21.2■□□□□ 0.98
Msh6P54276 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC21.2■□□□□ 0.98
Msh6P54276 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Msh6P54276 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC21.2■□□□□ 0.98
Msh6P54276 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC21.2■□□□□ 0.98
Msh6P54276 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Msh6P54276 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Msh6P54276 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC21.19■□□□□ 0.98
Msh6P54276 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Msh6P54276 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Rprl3-201ENSMUST00000157400 290 ntBASIC21.19■□□□□ 0.98
Msh6P54276 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Msh6P54276 Gm6296-201ENSMUST00000222599 943 ntBASIC21.19■□□□□ 0.98
Msh6P54276 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msh6P54276 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh6P54276 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Msh6P54276 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh6P54276 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Msh6P54276 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh6P54276 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Msh6P54276 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Msh6P54276 Gm7862-201ENSMUST00000121461 292 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm1818-201ENSMUST00000169406 1184 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44357-201ENSMUST00000195897 142 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm19658-201ENSMUST00000196231 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44367-201ENSMUST00000196836 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44350-201ENSMUST00000197197 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44390-201ENSMUST00000197533 144 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44313-201ENSMUST00000198018 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44486-201ENSMUST00000198508 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44454-201ENSMUST00000198541 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44314-201ENSMUST00000199263 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44394-201ENSMUST00000199558 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44484-201ENSMUST00000199873 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44466-201ENSMUST00000200264 138 ntBASIC21.18■□□□□ 0.98
Msh6P54276 Gm44359-201ENSMUST00000200671 138 ntBASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms