Protein–RNA interactions for Protein: O70400

Pdlim1, PDZ and LIM domain protein 1, mousemouse

Predictions only

Length 327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim1O70400 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Pdlim1O70400 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Pdlim1O70400 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Pdlim1O70400 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Pdlim1O70400 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Pdlim1O70400 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC16.55■□□□□ 0.24
Pdlim1O70400 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.55■□□□□ 0.24
Pdlim1O70400 AC121598.2-201ENSMUST00000228376 2325 ntBASIC16.55■□□□□ 0.24
Pdlim1O70400 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC16.55■□□□□ 0.24
Pdlim1O70400 Gm11355-201ENSMUST00000121120 306 ntBASIC16.55■□□□□ 0.24
Pdlim1O70400 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Pdlim1O70400 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Pdlim1O70400 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Pdlim1O70400 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Pdlim1O70400 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Pdlim1O70400 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Pdlim1O70400 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Pdlim1O70400 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Pdlim1O70400 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Pdlim1O70400 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Pdlim1O70400 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC16.54■□□□□ 0.24
Pdlim1O70400 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC16.54■□□□□ 0.24
Pdlim1O70400 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
Pdlim1O70400 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.54■□□□□ 0.24
Pdlim1O70400 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Pdlim1O70400 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC16.54■□□□□ 0.24
Pdlim1O70400 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Pdlim1O70400 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Pdlim1O70400 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Pdlim1O70400 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
Pdlim1O70400 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Pdlim1O70400 Gm11336-201ENSMUST00000118168 334 ntBASIC16.53■□□□□ 0.24
Pdlim1O70400 Gm44450-201ENSMUST00000199528 114 ntBASIC16.53■□□□□ 0.24
Pdlim1O70400 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.53■□□□□ 0.24
Pdlim1O70400 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pdlim1O70400 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC16.53■□□□□ 0.24
Pdlim1O70400 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Pdlim1O70400 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
Pdlim1O70400 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
Pdlim1O70400 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pdlim1O70400 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Pdlim1O70400 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pdlim1O70400 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pdlim1O70400 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Pdlim1O70400 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pdlim1O70400 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pdlim1O70400 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pdlim1O70400 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pdlim1O70400 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC16.52■□□□□ 0.23
Pdlim1O70400 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Pdlim1O70400 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Pdlim1O70400 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Pdlim1O70400 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Pdlim1O70400 Gm9013-201ENSMUST00000132939 882 ntBASIC16.51■□□□□ 0.23
Pdlim1O70400 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC16.51■□□□□ 0.23
Pdlim1O70400 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Gm6659-201ENSMUST00000174752 547 ntBASIC16.51■□□□□ 0.23
Pdlim1O70400 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC16.51■□□□□ 0.23
Pdlim1O70400 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
Pdlim1O70400 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pdlim1O70400 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms