Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd3B1AR17 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd3B1AR17 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd3B1AR17 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd3B1AR17 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd3B1AR17 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Chd3B1AR17 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Chd3B1AR17 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Chd3B1AR17 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC16.39■□□□□ 0.21
Chd3B1AR17 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC16.39■□□□□ 0.21
Chd3B1AR17 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Chd3B1AR17 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Chd3B1AR17 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC16.39■□□□□ 0.21
Chd3B1AR17 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC16.39■□□□□ 0.21
Chd3B1AR17 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC16.39■□□□□ 0.21
Chd3B1AR17 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.39■□□□□ 0.21
Chd3B1AR17 AC153889.1-201ENSMUST00000219257 330 ntBASIC16.39■□□□□ 0.21
Chd3B1AR17 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd3B1AR17 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Chd3B1AR17 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Chd3B1AR17 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC16.38■□□□□ 0.21
Chd3B1AR17 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Chd3B1AR17 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Chd3B1AR17 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd3B1AR17 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd3B1AR17 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd3B1AR17 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd3B1AR17 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Gm6623-201ENSMUST00000173570 544 ntBASIC16.37■□□□□ 0.21
Chd3B1AR17 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd3B1AR17 AC164629.2-201ENSMUST00000217916 270 ntBASIC16.37■□□□□ 0.21
Chd3B1AR17 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd3B1AR17 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd3B1AR17 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.37■□□□□ 0.21
Chd3B1AR17 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Chd3B1AR17 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Chd3B1AR17 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Chd3B1AR17 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC16.36■□□□□ 0.21
Chd3B1AR17 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC16.36■□□□□ 0.21
Chd3B1AR17 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC16.36■□□□□ 0.21
Chd3B1AR17 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Chd3B1AR17 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Chd3B1AR17 Gm27742-201ENSMUST00000184667 60 ntBASIC16.36■□□□□ 0.21
Chd3B1AR17 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Chd3B1AR17 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Chd3B1AR17 Gm11841-201ENSMUST00000117060 1963 ntBASIC16.35■□□□□ 0.21
Chd3B1AR17 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd3B1AR17 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd3B1AR17 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd3B1AR17 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd3B1AR17 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Chd3B1AR17 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Chd3B1AR17 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd3B1AR17 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Chd3B1AR17 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.35■□□□□ 0.21
Chd3B1AR17 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC16.35■□□□□ 0.21
Chd3B1AR17 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC16.35■□□□□ 0.21
Chd3B1AR17 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms